recipe batch_brb

A tool for the automation of best reciprocal BLAST and phylogenetic analysis using FastTree






package batch_brb

(downloads) docker_batch_brb



depends bash:


depends biopython:


depends blast:


depends fasttree:


depends muscle:


depends numpy:


depends pandas:


depends perl-fast:

depends python:


depends sed:


depends seqkit:


depends sqlite:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install batch_brb

and update with::

   mamba update batch_brb

To create a new environment, run:

mamba create --name myenvname batch_brb

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `batch_brb/tags`_ for valid values for ``<tag>``)

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