bbmap

downloads

BBMap is a short read aligner, as well as various other bioinformatic tools.

Home https://sourceforge.net/projects/bbmap
Versions 35.85, 36.32, 36.84, 37.02, 37.10, 37.17, 37.52, 37.62, 37.66, 37.75, 37.77, 37.78, 37.90, 37.95, 37.96, 37.99, 38.06, 38.16, 38.18, 38.19, 38.20, 38.22
License UC-LBL license (see package)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bbmap
Documentation https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
Links biotools: bbmap, doi: 10.1371/journal.pone.0185056

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bbmap

and update with:

conda update bbmap

Notes

BBMap is a series of Java programs, but they come with a number of custom wrapper shell scripts. Each of these is symlinked to the conda bin directory during install.

docker

A Docker container is available at https://quay.io/repository/biocontainers/bbmap.