recipe bbmap

BBMap is a short read aligner, as well as various other bioinformatic tools.

Homepage

https://sourceforge.net/projects/bbmap

Documentation

https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/

License

UC-LBL license (see package)

Recipe

/bbmap/meta.yaml

Links

biotools: bbmap, doi: 10.1371/journal.pone.0185056

package bbmap

(downloads) docker_bbmap

Versions

38.58-0, 38.57-0, 38.56-0, 38.51-0, 38.49-0, 38.46-0, 38.45-0, 38.44-0, 38.22-1, 38.22-0, 38.20-0, 38.19-0, 38.18-0, 38.16-0, 38.06-2, 38.06-0, 37.99-1, 37.99-0, 37.96-0, 37.95-0, 37.90-0, 37.78-0, 37.77-0, 37.75-0, 37.66-0, 37.62-1, 37.62-0, 37.52-1, 37.52-0, 37.17-1, 37.17-0, 37.10-1, 37.10-0, 37.02-0, 36.84-0, 36.32-0, 35.85-2, 35.85-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bbmap

and update with:

conda update bbmap

or use the docker container:

docker pull quay.io/biocontainers/bbmap:<tag>

(see bbmap/tags for valid values for <tag>)

Notes

BBMap is a series of Java programs, but they come with a number of custom wrapper shell scripts. Each of these is symlinked to the conda bin directory during install.