recipe bcbio-gff

A Python library to read and write Generic Feature Format (GFF).

Homepage:

https://github.com/chapmanb/bcbb/tree/master/gff

License:

Biopython License Agreement

Recipe:

/bcbio-gff/meta.yaml

package bcbio-gff

(downloads) docker_bcbio-gff

versions:
0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.9-1,  0.6.9-0,  0.6.8-0,  0.6.7-0,  0.6.6-1, 

0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.9-1,  0.6.9-0,  0.6.8-0,  0.6.7-0,  0.6.6-1,  0.6.6-0,  0.6.4-1,  0.6.4-0,  0.6.2-1,  0.6.2-0

depends biopython:

depends bx-python:

depends python:

depends six:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bcbio-gff

and update with::

   mamba update bcbio-gff

To create a new environment, run:

mamba create --name myenvname bcbio-gff

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bcbio-gff:<tag>

(see `bcbio-gff/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bcbio-gff/README.html)