bcftools-snvphyl-plugin

downloads

The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collectionof microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin

Home https://github.com/phac-nml/snvphyl-tools
Versions 1.5, 1.6
License apache_2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bcftools-snvphyl-plugin

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bcftools-snvphyl-plugin

and update with:

conda update bcftools-snvphyl-plugin

docker

A Docker container is available at https://quay.io/repository/biocontainers/bcftools-snvphyl-plugin.