recipe beast

BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC

Homepage:

http://beast.bio.ed.ac.uk

Developer docs:

https://github.com/beast-dev/beast-mcmc

License:

GPL / LGPL-2.1

Recipe:

/beast/meta.yaml

Links:

biotools: beast, doi: 10.1093/molbev/mss075

package beast

(downloads) docker_beast

versions:
1.10.4-2,  1.10.4-1,  1.10.4-0,  1.10.3-0,  1.10.2-0,  1.10.1-0,  1.10.0-2,  1.10.0-0,  1.8.4-0, 

1.10.4-2,  1.10.4-1,  1.10.4-0,  1.10.3-0,  1.10.2-0,  1.10.1-0,  1.10.0-2,  1.10.0-0,  1.8.4-0,  1.8.2-1

depends beagle-lib:

depends openjdk:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install beast

and update with::

   mamba update beast

To create a new environment, run:

mamba create --name myenvname beast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/beast:<tag>

(see `beast/tags`_ for valid values for ``<tag>``)

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