bio_hansel

downloads

Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.nIncludes schemes for Heidelberg and Enteritidis subtyping.nDeveloped by Genevieve Labbe, James Robertson, Peter Kruczkiewicz, Chad R. Laing, Kim Ziebell, Marisa Rankin, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Eduardo N. Taboada, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Joanne MacKinnon, Benjamin M. Hetman, Roger Johnson, John H.E. Nash.n

Home https://github.com/phac-nml/bio_hansel
Versions 0.1.0, 0.2.0
License GNU General Public License v3 or later (GPLv3+)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bio_hansel

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bio_hansel

and update with:

conda update bio_hansel

docker

A Docker container is available at https://quay.io/repository/biocontainers/bio_hansel.