recipe bio_hansel

Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.

Homepage

https://github.com/phac-nml/biohansel

License

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe

/bio_hansel/meta.yaml

'Subtype Salmonella enterica genomes using 33bp k-mer typing schemes. ' 'Includes schemes for Heidelberg and Enteritidis subtyping.'

package bio_hansel

Versions

2.4.0-0,  2.2.0-1,  2.2.0-0,  2.1.1-0,  2.1.0-0,  2.0.0-1,  2.0.0-0,  1.3.2-0,  1.3.1-0, 

2.4.0-0,  2.2.0-1,  2.2.0-0,  2.1.1-0,  2.1.0-0,  2.0.0-1,  2.0.0-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.3-0,  1.1.1-0,  1.1.0-0,  0.2.0-1,  0.1.0-0

Depends

• attrs

• numpy >=1.12.1

• pandas >=0.20.1

• pyahocorasick >=1.1.6

• python >=3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bio_hansel

and update with:

conda update bio_hansel

or use the docker container:

docker pull quay.io/biocontainers/bio_hansel:<tag>

(see bio_hansel/tags for valid values for <tag>)

Link to this page

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