recipe bioconductor-abarray

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ABarray.html

License

GPL

Recipe

/bioconductor-abarray/meta.yaml

package bioconductor-abarray

(downloads) docker_bioconductor-abarray

Versions

1.50.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-abarray

and update with:

conda update bioconductor-abarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-abarray:<tag>

(see bioconductor-abarray/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-abarray/README.html)