recipe bioconductor-abarray

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ABarray.html

License

GPL

Recipe

/bioconductor-abarray/meta.yaml

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

package bioconductor-abarray

Versions

1.62.0-0,  1.60.0-0,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-1,  1.50.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-multtest >=2.50.0,<2.51.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-abarray

and update with:

conda update bioconductor-abarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-abarray:<tag>

(see bioconductor-abarray/tags for valid values for <tag>)

Download stats

Link to this page

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