recipe bioconductor-acgh

Classes and functions for Array Comparative Genomic Hybridization data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/aCGH.html

License:

GPL-2

Recipe:

/bioconductor-acgh/meta.yaml

Links:

biotools: acgh, doi: 10.1093/bioinformatics/bti677

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

package bioconductor-acgh

Versions:

1.76.0-1,  1.76.0-0,  1.72.0-2,  1.72.0-1,  1.72.0-0,  1.70.0-0,  1.68.0-1,  1.68.0-0,  1.66.0-0, 

1.76.0-1,  1.76.0-0,  1.72.0-2,  1.72.0-1,  1.72.0-0,  1.70.0-0,  1.68.0-1,  1.68.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-multtest >=2.54.0,<2.55.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-survival

Required By:

• bioconductor-rcgh

• bioconductor-crimage

• bioconductor-adacgh2

• bioconductor-snapcgh

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-acgh

and update with:

conda update bioconductor-acgh

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-acgh:<tag>

(see bioconductor-acgh/tags for valid values for <tag>)

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