recipe bioconductor-acgh

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/aCGH.html

License

GPL-2

Recipe

/bioconductor-acgh/meta.yaml

Links

biotools: acgh, doi: 10.1093/bioinformatics/bti677

package bioconductor-acgh

(downloads) docker_bioconductor-acgh

Versions

1.60.0-0, 1.58.0-0, 1.56.0-0, 1.54.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

Depends r-survival

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-acgh

and update with:

conda update bioconductor-acgh

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-acgh:<tag>

(see bioconductor-acgh/tags for valid values for <tag>)