- recipe bioconductor-adamgui
Activity and Diversity Analysis Module Graphical User Interface
- Homepage:
https://bioconductor.org/packages/3.18/bioc/html/ADAMgui.html
- License:
GPL (>= 2)
- Recipe:
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
- package bioconductor-adamgui¶
- versions:
1.18.0-0,1.16.0-0,1.14.0-0,1.10.0-0,1.8.0-0,1.6.0-1,1.6.0-0,1.4.0-0,1.2.0-0,1.18.0-0,1.16.0-0,1.14.0-0,1.10.0-0,1.8.0-0,1.6.0-1,1.6.0-0,1.4.0-0,1.2.0-0,1.0.0-1- depends bioconductor-adam:
>=1.18.0,<1.19.0- depends bioconductor-go.db:
>=3.18.0,<3.19.0- depends r-base:
>=4.3,<4.4.0a0- depends r-colorramps:
>=2.3- depends r-data.table:
>=1.11.4- depends r-dplyr:
>=0.7.6- depends r-dt:
>=0.4- depends r-ggplot2:
>=3.0.0- depends r-ggpubr:
>=0.1.8- depends r-ggrepel:
>=0.8.0- depends r-ggsignif:
>=0.4.0- depends r-gridextra:
>=2.3- depends r-knitr:
- depends r-rcolorbrewer:
>=1.1-2- depends r-reshape2:
>=1.4.3- depends r-shiny:
>=1.1.0- depends r-shinyjs:
>=1.0- depends r-stringi:
>=1.2.4- depends r-stringr:
>=1.3.1- depends r-testthat:
- depends r-varhandle:
>=2.0.3- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-adamgui and update with:: mamba update bioconductor-adamgui
To create a new environment, run:
mamba create --name myenvname bioconductor-adamgui
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-adamgui:<tag> (see `bioconductor-adamgui/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-adamgui/README.html)
