recipe bioconductor-adsplit

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/adSplit.html

License

GPL (>= 2)

Recipe

/bioconductor-adsplit/meta.yaml

package bioconductor-adsplit

(downloads) docker_bioconductor-adsplit

Versions

1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-go.db

>=3.7.0,<3.8.0

Depends bioconductor-kegg.db

>=3.2.0,<3.3.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

>=1.9.1

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-adsplit

and update with:

conda update bioconductor-adsplit

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adsplit:<tag>

(see bioconductor-adsplit/tags for valid values for <tag>)