- recipe bioconductor-affxparser
Affymetrix File Parsing SDK
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/affxparser.html
- License:
LGPL (>= 2)
- Recipe:
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
- package bioconductor-affxparser¶
-
- Versions:
1.70.0-2
,1.70.0-1
,1.70.0-0
,1.66.0-2
,1.66.0-1
,1.66.0-0
,1.64.0-0
,1.62.0-1
,1.62.0-0
,1.70.0-2
,1.70.0-1
,1.70.0-0
,1.66.0-2
,1.66.0-1
,1.66.0-0
,1.64.0-0
,1.62.0-1
,1.62.0-0
,1.60.0-0
,1.58.0-0
,1.56.0-1
,1.56.0-0
,1.54.0-0
,1.52.0-0
,1.50.0-0
,1.48.0-0
- Depends:
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-affxparser
and update with:
conda update bioconductor-affxparser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-affxparser:<tag>
(see bioconductor-affxparser/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-affxparser/README.html)