bioconductor-affxparser

downloads

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix’ Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Home http://bioconductor.org/packages/3.6/bioc/html/affxparser.html
Versions 1.48.0, 1.50.0
License LGPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-affxparser

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affxparser

and update with:

conda update bioconductor-affxparser

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-affxparser.