recipe bioconductor-affxparser

Affymetrix File Parsing SDK

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/affxparser.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-affxparser/meta.yaml

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

package bioconductor-affxparser

Versions:

1.70.0-2,  1.70.0-1,  1.70.0-0,  1.66.0-2,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0, 

1.70.0-2,  1.70.0-1,  1.70.0-0,  1.66.0-2,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0,  1.56.0-1,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-0

Depends:

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-gcsscore

• bioconductor-cn.farms

• r-eacon

• bioconductor-eventpointer

• bioconductor-italics

• bioconductor-affyilm

• bioconductor-oligo

• bioconductor-pdinfobuilder

• bioconductor-crossmeta

• bioconductor-generegionscan

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-affxparser

and update with:

conda update bioconductor-affxparser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affxparser:<tag>

(see bioconductor-affxparser/tags for valid values for <tag>)

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