recipe bioconductor-affxparser

Affymetrix File Parsing SDK

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/affxparser.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-affxparser/meta.yaml

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

package bioconductor-affxparser

(downloads) docker_bioconductor-affxparser

Versions:
1.70.0-21.70.0-11.70.0-01.66.0-21.66.0-11.66.0-01.64.0-01.62.0-11.62.0-0

1.70.0-21.70.0-11.70.0-01.66.0-21.66.0-11.66.0-01.64.0-01.62.0-11.62.0-01.60.0-01.58.0-01.56.0-11.56.0-01.54.0-01.52.0-01.50.0-01.48.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-affxparser

and update with:

conda update bioconductor-affxparser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affxparser:<tag>

(see bioconductor-affxparser/tags for valid values for <tag>)

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