recipe bioconductor-affy

Methods for Affymetrix Oligonucleotide Arrays

Homepage

https://bioconductor.org/packages/3.11/bioc/html/affy.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-affy/meta.yaml

Links

biotools: affy

The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

package bioconductor-affy

Versions

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-0,  1.50.0-0,  1.48.0-0

Depends

• bioconductor-affyio >=1.58.0,<1.59.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-preprocesscore >=1.50.0,<1.51.0

• bioconductor-zlibbioc >=1.34.0,<1.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-biocmanager

Required By

• bioconductor-scan.upc

• bioconductor-coexnet

• bioconductor-mlp

• bioconductor-mapredictdsc

• bioconductor-starr

• bioconductor-hiiragi2013

• bioconductor-affyrnadegradation

• bioconductor-ecolileucine

• bioconductor-cormotif

• bioconductor-arraytools

• bioconductor-rcgh

• bioconductor-makecdfenv

• bioconductor-lumi

• bioconductor-chimphumanbraindata

• bioconductor-affyexpress

• bioconductor-prebs

• bioconductor-rpa

• bioconductor-logitt

• bioconductor-agimicrorna

• bioconductor-cll

• bioconductor-risa

• bioconductor-arrayqualitymetrics

• bioconductor-curatedovariandata

• bioconductor-sscore

• bioconductor-affycontam

• bioconductor-simpleaffy

• bioconductor-crossmeta

• bioconductor-icheck

• bioconductor-eximir

• bioconductor-msnbase

• bioconductor-frmatools

• r-isogene

• bioconductor-plier

• bioconductor-geosubmission

• bioconductor-peca

• bioconductor-predasampledata

• bioconductor-altcdfenvs

• bioconductor-stategra

• bioconductor-affycoretools

• bioconductor-affyplm

• bioconductor-affyilm

• bioconductor-qpcrnorm

• bioconductor-curatedbladderdata

• bioconductor-affyqcreport

• bioconductor-panp

• bioconductor-puma

• bioconductor-chipxpress

• bioconductor-plw

• bioconductor-mimager

• bioconductor-spikein

• bioconductor-doscheda

• bioconductor-maskbad

• bioconductor-cafe

• bioconductor-cctutorial

• bioconductor-ampaffyexample

• bioconductor-rat2302frmavecs

• bioconductor-pvac

• bioconductor-htqpcr

• bioconductor-gcrma

• bioconductor-vsn

• bioconductor-rnits

• bioconductor-signaturesearchdata

• bioconductor-dualks

• bioconductor-refplus

• bioconductor-bronchialil13

• bioconductor-turbonorm

• bioconductor-spikeinsubset

• bioconductor-bgx

• bioconductor-egad

• bioconductor-mvoutdata

• bioconductor-arraymvout

• bioconductor-farms

• bioconductor-frma

• bioconductor-drugvsdisease

• bioconductor-allmll

• bioconductor-webbioc

• bioconductor-tilingarray

• bioconductor-xhybcasneuf

• bioconductor-affypara

• bioconductor-affylmgui

• bioconductor-ffpe

• bioconductor-maqcsubsetafx

• bioconductor-lmgene

• bioconductor-desousa2013

• bioconductor-harshlight

• bioconductor-affydata

• bioconductor-maqcsubset

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affy

and update with:

conda update bioconductor-affy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affy:<tag>

(see bioconductor-affy/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affy/README.html)