recipe bioconductor-affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/affycoretools.html

License:

Artistic-2.0

Recipe:

/bioconductor-affycoretools/meta.yaml

Links:

biotools: affycoretools, doi: 10.1038/nmeth.3252

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

package bioconductor-affycoretools

Versions:

1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-0, 

1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.2-0,  1.50.6-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-gcrma >=2.70.0,<2.71.0

• bioconductor-glimma >=2.8.0,<2.9.0

• bioconductor-gostats >=2.64.0,<2.65.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-oligoclasses >=1.60.0,<1.61.0

• bioconductor-reportingtools >=2.38.0,<2.39.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-ggplot2

• r-gplots

• r-hwriter

• r-lattice

• r-rsqlite

• r-xtable

Required By:

• bioconductor-agimicrorna

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-affycoretools

and update with:

conda update bioconductor-affycoretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affycoretools:<tag>

(see bioconductor-affycoretools/tags for valid values for <tag>)

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