recipe bioconductor-affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Homepage

https://bioconductor.org/packages/3.14/bioc/html/affycoretools.html

License

Artistic-2.0

Recipe

/bioconductor-affycoretools/meta.yaml

Links

biotools: affycoretools, doi: 10.1038/nmeth.3252

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

package bioconductor-affycoretools

Versions

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.2-0, 

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.2-0,  1.50.6-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-gcrma >=2.66.0,<2.67.0

• bioconductor-glimma >=2.4.0,<2.5.0

• bioconductor-gostats >=2.60.0,<2.61.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-oligoclasses >=1.56.0,<1.57.0

• bioconductor-reportingtools >=2.34.0,<2.35.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-dbi

• r-ggplot2

• r-gplots

• r-hwriter

• r-lattice

• r-rsqlite

• r-xtable

Required By

• bioconductor-agimicrorna

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affycoretools

and update with:

conda update bioconductor-affycoretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affycoretools:<tag>

(see bioconductor-affycoretools/tags for valid values for <tag>)

Download stats

Link to this page

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