recipe bioconductor-affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Homepage

https://bioconductor.org/packages/3.10/bioc/html/affycoretools.html

License

Artistic-2.0

Recipe

/bioconductor-affycoretools/meta.yaml

Links

biotools: affycoretools, doi: 10.1038/nmeth.3252

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

package bioconductor-affycoretools

Versions

1.58.0-0, 1.56.0-1, 1.54.0-0, 1.52.2-0, 1.50.6-0

Depends

• bioconductor-affy >=1.64.0,<1.65.0

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-gcrma >=2.58.0,<2.59.0

• bioconductor-gostats >=2.52.0,<2.53.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-oligoclasses >=1.48.0,<1.49.0

• bioconductor-reportingtools >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-ggplot2

• r-gplots

• r-hwriter

• r-lattice

• r-rsqlite

• r-xtable

Required By

• bioconductor-agimicrorna

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affycoretools

and update with:

conda update bioconductor-affycoretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affycoretools:<tag>

(see bioconductor-affycoretools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affycoretools/README.html)