recipe bioconductor-affycoretools

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Homepage

https://bioconductor.org/packages/3.11/bioc/html/affycoretools.html

License

Artistic-2.0

Recipe

/bioconductor-affycoretools/meta.yaml

Links

biotools: affycoretools, doi: 10.1038/nmeth.3252

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

package bioconductor-affycoretools

Versions

1.60.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.2-0,  1.50.6-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-gcrma >=2.60.0,<2.61.0

• bioconductor-glimma >=1.16.0,<1.17.0

• bioconductor-gostats >=2.54.0,<2.55.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-oligoclasses >=1.50.0,<1.51.0

• bioconductor-reportingtools >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-dbi

• r-ggplot2

• r-gplots

• r-hwriter

• r-lattice

• r-rsqlite

• r-xtable

Required By

• bioconductor-agimicrorna

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affycoretools

and update with:

conda update bioconductor-affycoretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affycoretools:<tag>

(see bioconductor-affycoretools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affycoretools/README.html)