recipe bioconductor-affyio

Tools for parsing Affymetrix data files



LGPL (>= 2)




biotools: affyio, doi: 10.1038/nmeth.3252

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

package bioconductor-affyio

(downloads) docker_bioconductor-affyio



depends bioconductor-zlibbioc:


depends bioconductor-zlibbioc:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-affyio

and update with::

   mamba update bioconductor-affyio

To create a new environment, run:

mamba create --name myenvname bioconductor-affyio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-affyio/tags`_ for valid values for ``<tag>``)

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