recipe bioconductor-ahensdbs

EnsDbs for AnnotationHub

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/AHEnsDbs.html

License:

Artistic-2.0

Recipe:

/bioconductor-ahensdbs/meta.yaml

Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API.

package bioconductor-ahensdbs

(downloads) docker_bioconductor-ahensdbs

versions:
1.1.10-0,  1.1.8-1,  1.1.8-0,  1.1.4-1,  1.1.2-0,  1.0.18-1,  1.0.18-0,  1.0.15-0,  1.0.14-0, 

1.1.10-0,  1.1.8-1,  1.1.8-0,  1.1.4-1,  1.1.2-0,  1.0.18-1,  1.0.18-0,  1.0.15-0,  1.0.14-0,  1.0.12-0,  1.0.9-1,  1.0.8-0

depends bioconductor-annotationhubdata:

>=1.32.0,<1.33.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-ensembldb:

>=2.26.0,<2.27.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ahensdbs

and update with::

   mamba update bioconductor-ahensdbs

To create a new environment, run:

mamba create --name myenvname bioconductor-ahensdbs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ahensdbs:<tag>

(see `bioconductor-ahensdbs/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ahensdbs/README.html)