Package Recipe 'bioconductor-ahpubmeddbs'

recipe bioconductor-ahpubmeddbs

SQLites, tibbles, and data.tables for AnnotationHub

Homepage:: https://bioconductor.org/packages/3.16/data/annotation/html/AHPubMedDbs.html
License:: Artistic-2.0
Recipe:: /bioconductor-ahpubmeddbs/meta.yaml

Supplies AnnotationHub with some preprocessed sqlite, tibble, and data.table datasets of PubMed. All the datasets are generated by our Snakemake workflow [pubmed-workflow](https://github.com/rikenbit/pubmed-workflow). For the details, see the README.md of pubmed-workflow.

package bioconductor-ahpubmeddbs¶

Versions:

1.5.0-0, 1.2.0-1, 1.2.0-0, 0.99.8-0

Depends:

bioconductor-annotationhub >=3.6.0,<3.7.0
bioconductor-data-packages >=20221102
curl
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ahpubmeddbs

and update with:

conda update bioconductor-ahpubmeddbs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ahpubmeddbs:<tag>

(see bioconductor-ahpubmeddbs/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ahpubmeddbs/README.html)