recipe bioconductor-airpart

Differential cell-type-specific allelic imbalance

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/airpart.html

License:

GPL-2

Recipe:

/bioconductor-airpart/meta.yaml

Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.

package bioconductor-airpart

(downloads) docker_bioconductor-airpart

Versions:

1.6.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-airpart

and update with:

conda update bioconductor-airpart

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-airpart:<tag>

(see bioconductor-airpart/tags for valid values for <tag>)

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