recipe bioconductor-allelicimbalance

Provides a framework for allelic specific expression investigation using RNA-seq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AllelicImbalance.html

License

GPL-3

Recipe

/bioconductor-allelicimbalance/meta.yaml

package bioconductor-allelicimbalance

(downloads) docker_bioconductor-allelicimbalance

Versions

1.20.0-1, 1.20.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-variantannotation

>=1.28.0,<1.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-gridextra

Depends r-lattice

Depends r-latticeextra

Depends r-nlme

Depends r-seqinr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-allelicimbalance

and update with:

conda update bioconductor-allelicimbalance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-allelicimbalance:<tag>

(see bioconductor-allelicimbalance/tags for valid values for <tag>)