bioconductor-annmap

downloads

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.

Home http://bioconductor.org/packages/3.6/bioc/html/annmap.html
Versions 1.18.0, 1.20.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-annmap

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annmap

and update with:

conda update bioconductor-annmap

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-annmap.