recipe bioconductor-annmap

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/annmap.html

License:

GPL-2

Recipe:

/bioconductor-annmap/meta.yaml

Links:

biotools: annmap, doi: 10.1093/nar/gkm779

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl. The annmap database can be downloaded from: https://figshare.manchester.ac.uk/account/articles/16685071

package bioconductor-annmap

(downloads) docker_bioconductor-annmap

Versions:
1.40.0-01.36.0-01.34.0-01.32.0-11.32.0-01.30.0-01.28.0-01.26.0-11.24.0-0

1.40.0-01.36.0-01.34.0-01.32.0-11.32.0-01.30.0-01.28.0-01.26.0-11.24.0-01.22.0-01.20.0-01.18.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-annmap

and update with:

conda update bioconductor-annmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annmap:<tag>

(see bioconductor-annmap/tags for valid values for <tag>)

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