recipe bioconductor-annmap

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/annmap.html

License

GPL-2

Recipe

/bioconductor-annmap/meta.yaml

Links

biotools: annmap, doi: 10.1093/nar/gkm779

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.

package bioconductor-annmap

(downloads) docker_bioconductor-annmap

Versions

1.30.0-01.28.0-01.26.0-11.24.0-01.22.0-01.20.0-01.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annmap

and update with:

conda update bioconductor-annmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annmap:<tag>

(see bioconductor-annmap/tags for valid values for <tag>)