Package Recipe 'bioconductor-annotationdbi'

recipe bioconductor-annotationdbi

Manipulation of SQLite-based annotations in Bioconductor

Homepage: https://bioconductor.org/packages/3.13/bioc/html/AnnotationDbi.html
License: Artistic-2.0
Recipe: /bioconductor-annotationdbi/meta.yaml
Links: biotools: annotationdbi, doi: 10.1038/nmeth.3252

Implements a user-friendly interface for querying SQLite-based annotation data packages.

package bioconductor-annotationdbi¶

Versions

1.54.0-0, 1.52.0-1, 1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-1, 1.44.0-0, 1.42.1-0, 1.40.0-0,

1.54.0-0, 1.52.0-1, 1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-1, 1.44.0-0, 1.42.1-0, 1.40.0-0, 1.38.2-0, 1.38.0-0, 1.36.2-0, 1.36.0-1, 1.34.4-1, 1.34.4-0, 1.32.3-0, 1.32.2-0, 1.32.0-0, 1.30.1-0

Depends

bioconductor-biobase >=2.52.0,<2.53.0
bioconductor-biocgenerics >=0.38.0,<0.39.0
bioconductor-iranges >=2.26.0,<2.27.0
bioconductor-keggrest >=1.32.0,<1.33.0
bioconductor-s4vectors >=0.30.0,<0.31.0
r-base >=4.1,<4.2.0a0
r-dbi
r-rsqlite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotationdbi

and update with:

conda update bioconductor-annotationdbi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotationdbi:<tag>

(see bioconductor-annotationdbi/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotationdbi/README.html)