recipe bioconductor-annotationhub

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AnnotationHub.html

License

Artistic-2.0

Recipe

/bioconductor-annotationhub/meta.yaml

Links

biotools: annotationhub, doi: 10.1038/nmeth.3252

package bioconductor-annotationhub

(downloads) docker_bioconductor-annotationhub

Versions

2.14.5-0, 2.14.2-0, 2.12.1-0, 2.10.1-0, 2.10.0-0, 2.8.2-0, 2.6.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-interactivedisplaybase

>=1.20.0,<1.21.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-biocmanager

Depends r-curl

Depends r-httr

Depends r-rsqlite

Depends r-yaml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotationhub

and update with:

conda update bioconductor-annotationhub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotationhub:<tag>

(see bioconductor-annotationhub/tags for valid values for <tag>)