recipe bioconductor-antiprofilesdata

Normal colon and cancer preprocessed affy data for antiProfile building.






Colon normal tissue and cancer samples used in Corrada Bravo, et al. gene expression anti-profiles paper: BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272. Measurements are z-scores obtained from the GeneExpression Barcode in the 'frma' package

package bioconductor-antiprofilesdata

(downloads) docker_bioconductor-antiprofilesdata



depends bioconductor-biobase:


depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-antiprofilesdata

and update with::

   mamba update bioconductor-antiprofilesdata

To create a new environment, run:

mamba create --name myenvname bioconductor-antiprofilesdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-antiprofilesdata/tags`_ for valid values for ``<tag>``)

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