recipe bioconductor-aroma.light

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/aroma.light.html

License:

GPL (>= 2)

Recipe:

/bioconductor-aroma.light/meta.yaml

Links:

biotools: aroma.light

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

package bioconductor-aroma.light

(downloads) docker_bioconductor-aroma.light

versions:
3.32.0-0,  3.30.0-0,  3.28.0-0,  3.24.0-0,  3.22.0-0,  3.20.0-1,  3.20.0-0,  3.18.0-0,  3.16.0-0, 

3.32.0-0,  3.30.0-0,  3.28.0-0,  3.24.0-0,  3.22.0-0,  3.20.0-1,  3.20.0-0,  3.18.0-0,  3.16.0-0,  3.14.0-1,  3.14.0-0,  3.12.0-1,  3.12.0-0,  3.10.0-0,  3.8.0-0,  3.6.0-0,  3.4.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-matrixstats:

>=0.55.0

depends r-r.methodss3:

>=1.7.1

depends r-r.oo:

>=1.23.0

depends r-r.utils:

>=2.9.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-aroma.light

and update with::

   mamba update bioconductor-aroma.light

To create a new environment, run:

mamba create --name myenvname bioconductor-aroma.light

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-aroma.light:<tag>

(see `bioconductor-aroma.light/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aroma.light/README.html)