-
recipe
bioconductor-arraymvout
multivariate outlier detection for expression array QA
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/arrayMvout.html
- License
Artistic-2.0
- Recipe
This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate
-
package
bioconductor-arraymvout
¶ -
- Versions
1.48.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.40.0-0
- Depends
bioconductor-affy
>=1.68.0,<1.69.0
bioconductor-affycontam
>=1.48.0,<1.49.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-lumi
>=2.42.0,<2.43.0
bioconductor-mdqc
>=1.52.0,<1.53.0
bioconductor-parody
>=1.48.0,<1.49.0
bioconductor-simpleaffy
>=2.66.0,<2.67.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-arraymvout
and update with:
conda update bioconductor-arraymvout
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-arraymvout:<tag>
(see bioconductor-arraymvout/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-arraymvout/README.html)