recipe bioconductor-arraymvout

multivariate outlier detection for expression array QA

Homepage

https://bioconductor.org/packages/3.12/bioc/html/arrayMvout.html

License

Artistic-2.0

Recipe

/bioconductor-arraymvout/meta.yaml

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

package bioconductor-arraymvout

Versions

1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-0

Depends

• bioconductor-affy >=1.68.0,<1.69.0

• bioconductor-affycontam >=1.48.0,<1.49.0

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-lumi >=2.42.0,<2.43.0

• bioconductor-mdqc >=1.52.0,<1.53.0

• bioconductor-parody >=1.48.0,<1.49.0

• bioconductor-simpleaffy >=2.66.0,<2.67.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arraymvout

and update with:

conda update bioconductor-arraymvout

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arraymvout:<tag>

(see bioconductor-arraymvout/tags for valid values for <tag>)

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arraymvout/README.html)