recipe bioconductor-arrayqualitymetrics

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/arrayQualityMetrics.html

License

LGPL (>= 2)

Recipe

/bioconductor-arrayqualitymetrics/meta.yaml

Links

biotools: arrayqualitymetrics

package bioconductor-arrayqualitymetrics

(downloads) docker_bioconductor-arrayqualitymetrics

Versions

3.38.0-0, 3.36.0-0, 3.34.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-affyplm

>=1.58.0,<1.59.0

Depends bioconductor-beadarray

>=2.32.0,<2.33.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-vsn

>=3.50.0,<3.51.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cairo

>=1.4-6

Depends r-gridsvg

>=1.4-3

Depends r-hmisc

Depends r-hwriter

Depends r-lattice

Depends r-latticeextra

Depends r-rcolorbrewer

Depends r-setrng

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayqualitymetrics

and update with:

conda update bioconductor-arrayqualitymetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayqualitymetrics:<tag>

(see bioconductor-arrayqualitymetrics/tags for valid values for <tag>)