bioconductor-asafe

downloads

Given admixed individuals’ bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Home http://bioconductor.org/packages/3.6/bioc/html/ASAFE.html
Versions 1.2.0, 1.4.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-asafe

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-asafe

and update with:

conda update bioconductor-asafe

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-asafe.