bioconductor-asgsca

downloads

The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).

Home http://bioconductor.org/packages/3.6/bioc/html/ASGSCA.html
Versions 1.10.0, 1.12.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-asgsca

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-asgsca

and update with:

conda update bioconductor-asgsca

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-asgsca.