- recipe bioconductor-assign
Adaptive Signature Selection and InteGratioN (ASSIGN)
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ASSIGN.html
- License:
MIT + file LICENSE
- Recipe:
ASSIGN is a computational tool to evaluate the pathway deregulation/activation status in individual patient samples. ASSIGN employs a flexible Bayesian factor analysis approach that adapts predetermined pathway signatures derived either from knowledge-based literature or from perturbation experiments to the cell-/tissue-specific pathway signatures. The deregulation/activation level of each context-specific pathway is quantified to a score, which represents the extent to which a patient sample encompasses the pathway deregulation/activation signature.
- package bioconductor-assign¶
-
- Versions:
1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.1-1
,1.18.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-assign
and update with:
conda update bioconductor-assign
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-assign:<tag>
(see bioconductor-assign/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-assign/README.html)