recipe bioconductor-asurat

Functional annotation-driven unsupervised clustering for single-cell data



GPL-3 + file LICENSE



ASURAT is a software for single-cell data analysis. Using ASURAT, one can simultaneously perform unsupervised clustering and biological interpretation in terms of cell type, disease, biological process, and signaling pathway activity. Inputting a single-cell RNA-seq data and knowledge-based databases, such as Cell Ontology, Gene Ontology, KEGG, etc., ASURAT transforms gene expression tables into original multivariate tables, termed sign-by-sample matrices (SSMs).

package bioconductor-asurat

(downloads) docker_bioconductor-asurat



depends bioconductor-complexheatmap:


depends bioconductor-complexheatmap:


depends bioconductor-s4vectors:


depends bioconductor-s4vectors:


depends bioconductor-singlecellexperiment:


depends bioconductor-singlecellexperiment:


depends bioconductor-summarizedexperiment:


depends bioconductor-summarizedexperiment:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-circlize:

depends r-cluster:

depends r-plot3d:

depends r-rcpp:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-asurat

and update with::

   mamba update bioconductor-asurat

To create a new environment, run:

mamba create --name myenvname bioconductor-asurat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-asurat/tags`_ for valid values for ``<tag>``)

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