recipe bioconductor-attract

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/attract.html

License:

LGPL (>= 2.0)

Recipe:

/bioconductor-attract/meta.yaml

This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.

package bioconductor-attract

Versions:

1.50.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-gostats >=2.64.0,<2.65.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-reactome.db >=1.82.0,<1.83.0

• r-base >=4.2,<4.3.0a0

• r-cluster

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-attract

and update with:

conda update bioconductor-attract

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-attract:<tag>

(see bioconductor-attract/tags for valid values for <tag>)

Download stats

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