-
recipe
bioconductor-ballgown
¶ Flexible, isoform-level differential expression analysis
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/ballgown.html
- License
Artistic-2.0
- Recipe
- Links
biotools: ballgown, doi: 10.1038/nbt.3172
Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.
-
package
bioconductor-ballgown
¶ -
- Versions
2.18.0-0, 2.16.0-1, 2.14.0-0, 2.12.0-0, 2.10.0-0, 2.8.4-0, 2.2.0-0
- Depends
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-rtracklayer >=1.46.0,<1.47.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-sva >=3.34.0,<3.35.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ballgown
and update with:
conda update bioconductor-ballgown
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ballgown:<tag>
(see bioconductor-ballgown/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ballgown/README.html)