recipe bioconductor-basicstarrseq

Basic peak calling on STARR-seq data based on a method introduced in “Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq” Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BasicSTARRseq.html

License

LGPL-3

Recipe

/bioconductor-basicstarrseq/meta.yaml

package bioconductor-basicstarrseq

(downloads) docker_bioconductor-basicstarrseq

Versions

1.12.0-1, 1.10.0-1, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-basicstarrseq

and update with:

conda update bioconductor-basicstarrseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-basicstarrseq:<tag>

(see bioconductor-basicstarrseq/tags for valid values for <tag>)