recipe bioconductor-beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/beadarray.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-beadarray/meta.yaml

Links:

biotools: beadarray

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

package bioconductor-beadarray

Versions:

2.48.0-0,  2.44.0-2,  2.44.0-1,  2.44.0-0,  2.42.0-0,  2.40.0-1,  2.40.0-0,  2.38.0-0,  2.36.0-0, 

2.48.0-0,  2.44.0-2,  2.44.0-1,  2.44.0-0,  2.42.0-0,  2.40.0-1,  2.40.0-0,  2.38.0-0,  2.36.0-0,  2.34.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.1-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-beaddatapackr >=1.50.0,<1.51.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-illuminaio >=0.40.0,<0.41.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-hexbin

• r-reshape2

Required By:

• bioconductor-beadarrayexampledata

• bioconductor-blima

• bioconductor-beadarrayusecases

• bioconductor-epigenomix

• bioconductor-arrayqualitymetrics

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-beadarray

and update with:

conda update bioconductor-beadarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beadarray:<tag>

(see bioconductor-beadarray/tags for valid values for <tag>)

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