recipe bioconductor-beclear

Correction of batch effects in DNA methylation data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/BEclear.html

License

GPL-3

Recipe

/bioconductor-beclear/meta.yaml

Links

biotools: beclear, doi: 10.1371/journal.pone.0159921

Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

package bioconductor-beclear

Versions

2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-1,  2.0.0-0,  1.14.0-0,  1.12.1-0,  1.10.0-0,  1.8.0-0

Depends

• bioconductor-biocparallel >=1.24.0,<1.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-abind

• r-base >=4.0,<4.1.0a0

• r-data.table >=1.11.8

• r-futile.logger

• r-matrix

• r-outliers

• r-rcpp

• r-rdpack

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-beclear

and update with:

conda update bioconductor-beclear

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-beclear:<tag>

(see bioconductor-beclear/tags for valid values for <tag>)

Link to this page

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