-
recipe
bioconductor-beclear
Correction of batch effects in DNA methylation data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/BEclear.html
- License
GPL-3
- Recipe
- Links
biotools: beclear, doi: 10.1371/journal.pone.0159921
Provides functions to detect and correct for batch effects in DNA methylation data. The core function is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.
-
package
bioconductor-beclear
¶ -
- Versions
2.6.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,2.0.0-0
,1.14.0-0
,1.12.1-0
,1.10.0-0
,1.8.0-0
- Depends
bioconductor-biocparallel
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
r-data.table
>=1.11.8
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-beclear
and update with:
conda update bioconductor-beclear
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-beclear:<tag>
(see bioconductor-beclear/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-beclear/README.html)