recipe bioconductor-bgeecall

Automatic RNA-Seq present/absent gene expression calls generation

Homepage

https://bioconductor.org/packages/3.12/bioc/html/BgeeCall.html

License

GPL-3

Recipe

/bioconductor-bgeecall/meta.yaml

BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee (https://bgee.org).

package bioconductor-bgeecall

(downloads) docker_bioconductor-bgeecall

Versions

1.6.0-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bgeecall

and update with:

conda update bioconductor-bgeecall

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bgeecall:<tag>

(see bioconductor-bgeecall/tags for valid values for <tag>)