-
recipe
bioconductor-bgeedb
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/BgeeDB.html
- License
GPL-3 + file LICENSE
- Recipe
- Links
biotools: bgeedb, doi: 10.12688/f1000research.9973.1
A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
-
package
bioconductor-bgeedb
¶ -
- Versions
2.16.0-0
,2.14.0-0
,2.12.0-0
,2.10.0-1
,2.8.0-0
,2.6.2-0
,2.4.0-0
,2.2.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-graph
>=1.68.0,<1.69.0
bioconductor-topgo
>=2.41.0,<2.42.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bgeedb
and update with:
conda update bioconductor-bgeedb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bgeedb:<tag>
(see bioconductor-bgeedb/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bgeedb/README.html)