recipe bioconductor-bgeedb

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BgeeDB.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-bgeedb/meta.yaml

Links:

biotools: bgeedb, doi: 10.12688/f1000research.9973.1

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

package bioconductor-bgeedb

(downloads) docker_bioconductor-bgeedb

Versions:
2.24.0-02.20.0-02.18.0-02.16.0-12.16.0-02.14.0-02.12.0-02.10.0-12.8.0-0

2.24.0-02.20.0-02.18.0-02.16.0-12.16.0-02.14.0-02.12.0-02.10.0-12.8.0-02.6.2-02.4.0-02.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bgeedb

and update with:

conda update bioconductor-bgeedb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bgeedb:<tag>

(see bioconductor-bgeedb/tags for valid values for <tag>)

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