recipe bioconductor-bgeedb

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Homepage

https://bioconductor.org/packages/3.11/bioc/html/BgeeDB.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-bgeedb/meta.yaml

Links

biotools: bgeedb, doi: 10.12688/f1000research.9973.1

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

package bioconductor-bgeedb

(downloads) docker_bioconductor-bgeedb

Versions

2.14.0-02.12.0-02.10.0-12.8.0-02.6.2-02.4.0-02.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bgeedb

and update with:

conda update bioconductor-bgeedb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bgeedb:<tag>

(see bioconductor-bgeedb/tags for valid values for <tag>)