- recipe bioconductor-biggr
Constraint based modeling in R using metabolic reconstruction databases
- Homepage:
- License:
file LICENSE
- Recipe:
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
- package bioconductor-biggr¶
-
- Versions:
1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
- Depends:
bioconductor-hyperdraw
>=1.50.0,<1.51.0
bioconductor-hypergraph
>=1.70.0,<1.71.0
bioconductor-rsbml
>=2.56.0,<2.57.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-biggr
and update with:
conda update bioconductor-biggr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-biggr:<tag>
(see bioconductor-biggr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-biggr/README.html)