recipe bioconductor-biocparallel

Bioconductor facilities for parallel evaluation

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/BiocParallel.html

License:

GPL-2 | GPL-3

Recipe:

/bioconductor-biocparallel/meta.yaml

Links:

biotools: biocparallel, doi: 10.1214/14-STS476

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

package bioconductor-biocparallel

versions:

1.34.2-0,  1.32.5-1,  1.32.5-0,  1.32.0-0,  1.28.3-1,  1.28.3-0,  1.28.0-0,  1.26.0-0,  1.24.1-0, 

1.34.2-0,  1.32.5-1,  1.32.5-0,  1.32.0-0,  1.28.3-1,  1.28.3-0,  1.28.0-0,  1.26.0-0,  1.24.1-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.6-0,  1.16.2-1,  1.16.2-0,  1.14.2-0,  1.12.0-1,  1.12.0-0,  1.10.1-0,  1.6.6-1,  1.6.6-0,  1.5.0-0,  1.4.3-0,  1.4.0-0,  1.2.22-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-bh:

depends r-codetools:

depends r-cpp11:

depends r-futile.logger:

depends r-snow:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-biocparallel

and update with::

   mamba update bioconductor-biocparallel

To create a new environment, run:

mamba create --name myenvname bioconductor-biocparallel

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-biocparallel:<tag>

(see `bioconductor-biocparallel/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocparallel/README.html)