recipe bioconductor-biocparallel

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/BiocParallel.html

License

GPL-2 | GPL-3

Recipe

/bioconductor-biocparallel/meta.yaml

Links

biotools: biocparallel, doi: 10.1214/14-STS476

package bioconductor-biocparallel

Versions

1.16.6-0, 1.16.2-1, 1.16.2-0, 1.14.2-0, 1.12.0-1, 1.12.0-0, 1.10.1-0, 1.6.6-1, 1.6.6-0, 1.5.0-0, 1.4.3-0, 1.4.0-0, 1.2.22-0

Depends

• libgcc-ng >=7.3.0

• libgfortran-ng >=7,<8.0a0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-bh

• r-futile.logger

• r-snow

Required By

• bioconductor-abseqr

• bioconductor-flowcatchr

• bioconductor-dmchmm

• bioconductor-beclear

• bioconductor-cogaps

• bioconductor-chipexoqual

• bioconductor-gmapr

• bioconductor-icetea

• bioconductor-cpvsnp

• bioconductor-soggi

• bioconductor-hiccompare

• bioconductor-tvtb

• bioconductor-shortread

• bioconductor-tfbstools

• bioconductor-lowmaca

• bioconductor-hireadsprocessor

• bioconductor-interest

• bioconductor-scnorm

• bioconductor-ivas

• bioconductor-delayedarray

• bioconductor-recount

• bioconductor-multihiccompare

• bioconductor-loci2path

• bioconductor-findmyfriends

• bioconductor-msnbase

• bioconductor-qpgraph

• bioconductor-rqc

• bioconductor-trendy

• bioconductor-impulsede2

• bioconductor-genogam

• bioconductor-aldex2

• bioconductor-gdcrnatools

• bioconductor-scruff

• bioconductor-junctionseq

• bioconductor-sva

• bioconductor-genotypeeval

• bioconductor-pbcmc

• bioconductor-diffbind

• bioconductor-ipo

• bioconductor-rjmcmcnucleosomes

• bioconductor-singscore

• bioconductor-chromswitch

• bioconductor-srnadiff

• xtail

• bioconductor-tmixclust

• bioconductor-genomicalignments

• bioconductor-bionetstat

• bioconductor-dmrseq

• bioconductor-summarizedbenchmark

• bioconductor-outrider

• bioconductor-rsamtools

• bioconductor-cager

• bioconductor-dropletutils

• bioconductor-xcms

• bioconductor-consensusseeker

• bioconductor-chromvar

• bioconductor-desingle

• bioconductor-deseq2

• bioconductor-classifyr

• bioconductor-zinbwave

• bioconductor-clusterseq

• bioconductor-motifbreakr

• bioconductor-splatter

• bioconductor-mcbiclust

• bioconductor-inspect

• bioconductor-qsea

• bioconductor-scran

• bioconductor-bacon

• bioconductor-ruvcorr

• bioconductor-scone

• bioconductor-stroma4

• bioconductor-htseqgenie

• bioconductor-cellbaser

• bioconductor-mpranalyze

• bioconductor-cydar

• bioconductor-bsseq

• bioconductor-lineagepulse

• bioconductor-drimseq

• bioconductor-chipqc

• bioconductor-guideseq

• bioconductor-descan2

• bioconductor-cagefightr

• bioconductor-nbsplice

• bioconductor-methylinheritance

• bioconductor-crisprvariants

• bioconductor-variantfiltering

• bioconductor-proloc

• bioconductor-pbase

• bioconductor-cardinal

• bioconductor-copywriter

• bioconductor-affixcan

• bioconductor-ideal

• bioconductor-powerexplorer

• bioconductor-emdomics

• bioconductor-kinswingr

• bioconductor-macpet

• bioconductor-varianttools

• bioconductor-minfi

• bioconductor-pcan

• bioconductor-ioniser

• bioconductor-oscope

• bioconductor-iasva

• bioconductor-scoreinvhap

• bioconductor-asics

• bioconductor-dose

• bioconductor-sigfeature

• bioconductor-erssa

• bioconductor-gseabenchmarker

• bioconductor-consensusde

• bioconductor-scdd

• bioconductor-dcgsa

• bioconductor-decomplexdisease

• bioconductor-methylaid

• bioconductor-biocneighbors

• bioconductor-metabomxtr

• bioconductor-fgsea

• bioconductor-biotmle

• bioconductor-ihwpaper

• bioconductor-imas

• bioconductor-inpas

• bioconductor-baynorm

• bioconductor-metagene

• bioconductor-metnet

• bioconductor-biocor

• bioconductor-contibait

• bioconductor-erma

• r-msqrob

• bioconductor-mbased

• bioconductor-crisprseek

• bioconductor-h5vc

• bioconductor-quasr

• bioconductor-chromvar

• bioconductor-dexseq

• bioconductor-txreginfra

• bioconductor-camthc

• bioconductor-migsa

• bioconductor-sigcheck

• bioconductor-genomicfiles

• bioconductor-easyrnaseq

• bioconductor-methyvim

• bioconductor-snphood

• bioconductor-profia

• bioconductor-qdnaseq

• bioconductor-trena

• bioconductor-coseq

• bioconductor-csaw

• bioconductor-scde

• bioconductor-tarseqqc

• bioconductor-scater

• bioconductor-derfinder

• bioconductor-delayedmatrixstats

• bioconductor-amplican

• bioconductor-htsfilter

• bioconductor-doppelgangr

• bioconductor-tsrchitect

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-biocparallel

and update with:

conda update bioconductor-biocparallel

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocparallel:<tag>

(see bioconductor-biocparallel/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocparallel/README.html)