recipe bioconductor-biocsingular

Singular Value Decomposition for Bioconductor Packages

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BiocSingular.html

License:

GPL-3

Recipe:

/bioconductor-biocsingular/meta.yaml

Implements exact and approximate methods for singular value decomposition and principal components analysis, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Where possible, parallelization is achieved using the BiocParallel framework.

package bioconductor-biocsingular

Versions:

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-beachmat >=2.14.0,<2.15.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scaledmatrix >=1.6.0,<1.7.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-irlba

• r-matrix

• r-rcpp

• r-rsvd

Required By:

• bioconductor-scdblfinder

• bioconductor-gsva

• bioconductor-dino

• bioconductor-compartmap

• bioconductor-singler

• bioconductor-scry

• bioconductor-scmerge

• bioconductor-mumosa

• bioconductor-milor

• bioconductor-clusterexperiment

• bioconductor-delayedtensor

• bioconductor-nanomethviz

• bioconductor-bayesspace

• bioconductor-scran

• bioconductor-newwave

• bioconductor-pcatools

• bioconductor-velociraptor

• bioconductor-scater

• bioconductor-batchelor

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-biocsingular

and update with:

conda update bioconductor-biocsingular

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-biocsingular:<tag>

(see bioconductor-biocsingular/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-biocsingular/README.html)