- recipe bioconductor-bionet
Routines for the functional analysis of biological networks
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/BioNet.html
- License
GPL (>= 2)
- Recipe
- Links
biotools: bionet
This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.
- package bioconductor-bionet¶
-
- Versions
1.54.0-0
,1.52.0-0
,1.50.0-1
,1.50.0-0
,1.47.0-0
,1.46.0-0
,1.44.0-1
,1.42.0-0
,1.40.0-0
,1.54.0-0
,1.52.0-0
,1.50.0-1
,1.50.0-0
,1.47.0-0
,1.46.0-0
,1.44.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-graph
>=1.72.0,<1.73.0
bioconductor-rbgl
>=1.70.0,<1.71.0
r-base
>=4.1,<4.2.0a0
r-igraph
>=1.0.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bionet
and update with:
conda update bioconductor-bionet
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bionet:<tag>
(see bioconductor-bionet/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bionet/README.html)