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recipe
bioconductor-bionet¶ This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.
Homepage: https://bioconductor.org/packages/3.8/bioc/html/BioNet.html License: GPL (>= 2) Recipe: /bioconductor-bionet/meta.yaml Links: biotools: bionet
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package
bioconductor-bionet¶ 
Versions: 1.42.0-0, 1.40.0-0, 1.38.0-0, 1.36.0-0, 1.34.0-0
Depends: - bioconductor-annotationdbi >=1.44.0,<1.45.0
- bioconductor-biobase >=2.42.0,<2.43.0
- bioconductor-graph >=1.60.0,<1.61.0
- bioconductor-rbgl >=1.58.0,<1.59.0
- r-base >=3.5.1,<3.5.2.0a0
- r-igraph >=1.0.1
Required By: Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bionet
and update with:
conda update bioconductor-bionet
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bionet:<tag>
(see bioconductor-bionet/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bionet/README.html)