recipe bioconductor-bionet

This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BioNet.html

License

GPL (>= 2)

Recipe

/bioconductor-bionet/meta.yaml

Links

biotools: bionet

package bioconductor-bionet

Versions

1.42.0-0, 1.40.0-0, 1.38.0-0, 1.36.0-0, 1.34.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-graph >=1.60.0,<1.61.0

• bioconductor-rbgl >=1.58.0,<1.59.0

• r-base >=3.5.1,<3.5.2.0a0

• r-igraph >=1.0.1

Required By

• bioconductor-smite

• bioconductor-htsanalyzer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bionet

and update with:

conda update bioconductor-bionet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bionet:<tag>

(see bioconductor-bionet/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bionet/README.html)