bioconductor-bionet¶
This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.
| Home | http://bioconductor.org/packages/3.7/bioc/html/BioNet.html |
| Versions | 1.40.0, 1.38.0, 1.36.0, 1.34.0 |
| License | GPL (>= 2) |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-bionet |
| Links | biotools: bionet |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bionet
and update with:
conda update bioconductor-bionet
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-bionet.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-bionet/README.html)
