recipe bioconductor-bladderbatch

Bladder gene expression data illustrating batch effects






This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.

package bioconductor-bladderbatch

(downloads) docker_bioconductor-bladderbatch



depends bioconductor-biobase:


depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bladderbatch

and update with::

   mamba update bioconductor-bladderbatch

To create a new environment, run:

mamba create --name myenvname bioconductor-bladderbatch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-bladderbatch/tags`_ for valid values for ``<tag>``)

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