recipe bioconductor-bodymaprat

Experimental dataset from the rat BodyMap project

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/bodymapRat.html

License:

CC BY 4.0

Recipe:

/bioconductor-bodymaprat/meta.yaml

This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

package bioconductor-bodymaprat

Versions:

1.14.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bodymaprat

and update with:

conda update bioconductor-bodymaprat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bodymaprat:<tag>

(see bioconductor-bodymaprat/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bodymaprat/README.html)