recipe bioconductor-bodymaprat

Experimental dataset from the rat BodyMap project



CC BY 4.0



This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.

package bioconductor-bodymaprat

(downloads) docker_bioconductor-bodymaprat



depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends bioconductor-summarizedexperiment:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-bodymaprat

and update with::

   mamba update bioconductor-bodymaprat

To create a new environment, run:

mamba create --name myenvname bioconductor-bodymaprat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-bodymaprat/tags`_ for valid values for ``<tag>``)

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