recipe bioconductor-brgedata

Exposures, Gene Expression and Methylation data for ilustration purpouses

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/brgedata.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-brgedata/meta.yaml

This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.

package bioconductor-brgedata

(downloads) docker_bioconductor-brgedata

versions:
1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-summarizedexperiment:

>=1.36.0,<1.37.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-brgedata

and update with::

   mamba update bioconductor-brgedata

To create a new environment, run:

mamba create --name myenvname bioconductor-brgedata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-brgedata:<tag>

(see `bioconductor-brgedata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-brgedata/README.html)