recipe bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected major alleles (dbSNP151)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major.html

License:

CC BY-NC-ND 4.0

Recipe:

/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/meta.yaml

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with major allele injected from dbSNP151, and stored in Biostrings objects. Only single nucleotide variants (SNVs) were considered. At each SNV, the most frequent allele was chosen at the major allele to be injected into the reference genome.

package bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major

Versions:

0.0.9999-2,  0.0.9999-1,  0.0.9999-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major

and update with:

conda update bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major:<tag>

(see bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major/tags for valid values for <tag>)

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