recipe bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor.html

License:

CC BY-NC-ND 4.0

Recipe:

/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/meta.yaml

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome.

package bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

Versions:

0.0.9999-2,  0.0.9999-1,  0.0.9999-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221102

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

and update with:

conda update bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor:<tag>

(see bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor/tags for valid values for <tag>)

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