-
recipe
bioconductor-bsgenome¶ Infrastructure shared by all the Biostrings-based genome data packages.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/BSgenome.html
- License
Artistic-2.0
- Recipe
- Links
biotools: bsgenome, doi: 10.1038/nmeth.3252
-
package
bioconductor-bsgenome¶ 
- Versions
1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.2-0, 1.42.0-0, 1.40.1-0, 1.38.0-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-rtracklayer
>=1.42.0,<1.43.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-xvector
>=0.22.0,<0.23.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsgenome
and update with:
conda update bioconductor-bsgenome
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsgenome:<tag>
(see bioconductor-bsgenome/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsgenome/README.html)