Package Recipe 'bioconductor-bsgenome'

recipe bioconductor-bsgenome

Software infrastructure for efficient representation of full genomes and their SNPs

Homepage: https://bioconductor.org/packages/3.11/bioc/html/BSgenome.html
License: Artistic-2.0
Recipe: /bioconductor-bsgenome/meta.yaml
Links: biotools: bsgenome, doi: 10.1038/nmeth.3252

Infrastructure shared by all the Biostrings-based genome data packages.

package bioconductor-bsgenome¶

Versions

1.56.0-0, 1.54.0-0, 1.52.0-1, 1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.2-0, 1.42.0-0,

1.56.0-0, 1.54.0-0, 1.52.0-1, 1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.2-0, 1.42.0-0, 1.40.1-0, 1.38.0-0

Depends

bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-genomeinfodb >=1.24.0,<1.25.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-rsamtools >=2.4.0,<2.5.0
bioconductor-rtracklayer >=1.48.0,<1.49.0
bioconductor-s4vectors >=0.26.0,<0.27.0
bioconductor-xvector >=0.28.0,<0.29.0
r-base >=4.0,<4.1.0a0
r-matrixstats

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsgenome

and update with:

conda update bioconductor-bsgenome

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome:<tag>

(see bioconductor-bsgenome/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsgenome/README.html)