recipe bioconductor-bsgenome

Infrastructure shared by all the Biostrings-based genome data packages.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/BSgenome.html

License

Artistic-2.0

Recipe

/bioconductor-bsgenome/meta.yaml

Links

biotools: bsgenome, doi: 10.1038/nmeth.3252

package bioconductor-bsgenome

(downloads) docker_bioconductor-bsgenome

Versions

1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.2-0, 1.42.0-0, 1.40.1-0, 1.38.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsgenome

and update with:

conda update bioconductor-bsgenome

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsgenome:<tag>

(see bioconductor-bsgenome/tags for valid values for <tag>)