- recipe bioconductor-bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/BSgenome.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: bsgenome, doi: 10.1038/nmeth.3252
Infrastructure shared by all the Biostrings-based genome data packages.
- package bioconductor-bsgenome¶
-
- Versions:
1.62.0-0
,1.60.0-0
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.62.0-0
,1.60.0-0
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.0-0
,1.52.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.2-0
,1.42.0-0
,1.40.1-0
,1.38.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-xvector
>=0.34.0,<0.35.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-bsgenome
and update with:
conda update bioconductor-bsgenome
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsgenome:<tag>
(see bioconductor-bsgenome/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsgenome/README.html)