-
recipe
bioconductor-bsseq
¶ Analyze, manage and store bisulfite sequencing data
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: bsseq
A collection of tools for analyzing and visualizing bisulfite sequencing data.
-
package
bioconductor-bsseq
¶ -
- Versions
1.22.0-0, 1.20.0-1, 1.18.0-0, 1.16.1-0, 1.14.0-0
- Depends
bioconductor-beachmat >=2.2.0,<2.3.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-biocparallel >=1.20.0,<1.21.0
bioconductor-biostrings >=2.54.0,<2.55.0
bioconductor-bsgenome >=1.54.0,<1.55.0
bioconductor-delayedarray >=0.12.0,<0.13.0
bioconductor-delayedmatrixstats >=1.8.0,<1.9.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-hdf5array >=1.14.0,<1.15.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-rhdf5 >=2.30.0,<2.31.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
r-base >=3.6,<3.7.0a0
r-data.table >=1.11.8
r-r.utils >=2.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-bsseq
and update with:
conda update bioconductor-bsseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-bsseq:<tag>
(see bioconductor-bsseq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-bsseq/README.html)