recipe bioconductor-bsseq

Analyze, manage and store bisulfite sequencing data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/bsseq.html

License

Artistic-2.0

Recipe

/bioconductor-bsseq/meta.yaml

Links

biotools: bsseq

A collection of tools for analyzing and visualizing bisulfite sequencing data.

package bioconductor-bsseq

Versions

1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.1-0,  1.14.0-0

Depends

• bioconductor-beachmat >=2.8.0,<2.9.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-bsgenome >=1.60.0,<1.61.0

• bioconductor-delayedarray >=0.18.0,<0.19.0

• bioconductor-delayedmatrixstats >=1.14.0,<1.15.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-hdf5array >=1.20.0,<1.21.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-rhdf5 >=2.36.0,<2.37.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-base >=4.1,<4.2.0a0

• r-data.table >=1.11.8

• r-gtools

• r-locfit

• r-permute

• r-r.utils >=2.0.0

• r-rcpp

• r-scales

Required By

• bioconductor-tcgawgbsdata.hg19

• bioconductor-methylcc

• bioconductor-methylsig

• bioconductor-bsseqdata

• bioconductor-dmrcate

• bioconductor-nanomethviz

• bioconductor-scmeth

• bioconductor-dss

• bioconductor-methcp

• bioconductor-mira

• bioconductor-biscuiteer

• bioconductor-dmrseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bsseq

and update with:

conda update bioconductor-bsseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bsseq:<tag>

(see bioconductor-bsseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bsseq/README.html)