recipe bioconductor-bubbletree

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BubbleTree.html

License:

LGPL (>= 3)

Recipe:

/bioconductor-bubbletree/meta.yaml

Links:

biotools: bubbletree, doi: 10.1093/nar/gkv1102

CNV analysis in groups of tumor samples.

package bioconductor-bubbletree

Versions:

2.28.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-1,  2.12.0-0, 

2.28.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.14.0-1,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.8.0-0,  2.6.0-0,  2.4.0-0,  2.1.5-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-biovizbase >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-e1071

• r-ggplot2

• r-gridextra

• r-gtable

• r-gtools

• r-magrittr

• r-plyr

• r-rcolorbrewer

• r-writexls

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bubbletree

and update with:

conda update bioconductor-bubbletree

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bubbletree:<tag>

(see bioconductor-bubbletree/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-bubbletree/README.html)