recipe bioconductor-bumpymatrix

Bumpy Matrix of Non-Scalar Objects

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/BumpyMatrix.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-bumpymatrix/meta.yaml

Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.

package bioconductor-bumpymatrix

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

• bioconductor-mousegastrulationdata

• bioconductor-merfishdata

• bioconductor-coregx

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-bumpymatrix

and update with:

conda update bioconductor-bumpymatrix

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bumpymatrix:<tag>

(see bioconductor-bumpymatrix/tags for valid values for <tag>)

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