recipe bioconductor-cafe

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Homepage

https://bioconductor.org/packages/3.9/bioc/html/CAFE.html

License

GPL-3

Recipe

/bioconductor-cafe/meta.yaml

package bioconductor-cafe

(downloads) docker_bioconductor-cafe

Versions

1.18.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biovizbase

>=1.30.0,<1.31.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-ggbio

>=1.30.0,<1.31.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gridextra

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cafe

and update with:

conda update bioconductor-cafe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cafe:<tag>

(see bioconductor-cafe/tags for valid values for <tag>)